Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LHX1P48742 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.66■□□□□ 0.74
LHX1P48742 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.66■□□□□ 0.74
LHX1P48742 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.66■□□□□ 0.74
LHX1P48742 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.66■□□□□ 0.74
LHX1P48742 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.66■□□□□ 0.74
LHX1P48742 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
LHX1P48742 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.66■□□□□ 0.74
LHX1P48742 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.66■□□□□ 0.74
LHX1P48742 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LHX1P48742 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.66■□□□□ 0.74
LHX1P48742 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LHX1P48742 AC120498.9-201ENST00000339021 3867 ntBASIC19.66■□□□□ 0.74
LHX1P48742 MYLKP1-201ENST00000509077 1580 ntBASIC19.66■□□□□ 0.74
LHX1P48742 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.65■□□□□ 0.74
LHX1P48742 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX1P48742 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 MIR662-201ENST00000384847 95 ntBASIC19.65■□□□□ 0.74
LHX1P48742 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX1P48742 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX1P48742 AL645929.1-201ENST00000420084 975 ntBASIC19.65■□□□□ 0.74
LHX1P48742 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.65■□□□□ 0.74
LHX1P48742 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX1P48742 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.65■□□□□ 0.74
LHX1P48742 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX1P48742 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LHX1P48742 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LHX1P48742 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX1P48742 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX1P48742 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LHX1P48742 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LHX1P48742 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LHX1P48742 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LHX1P48742 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.64■□□□□ 0.73
LHX1P48742 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.64■□□□□ 0.73
LHX1P48742 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.64■□□□□ 0.73
LHX1P48742 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.64■□□□□ 0.73
LHX1P48742 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.64■□□□□ 0.73
LHX1P48742 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX1P48742 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX1P48742 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
LHX1P48742 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LHX1P48742 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX1P48742 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LHX1P48742 ANO7L1-203ENST00000602586 1720 ntBASIC19.63■□□□□ 0.73
LHX1P48742 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.63■□□□□ 0.73
LHX1P48742 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 MIR149-201ENST00000384879 89 ntBASIC19.63■□□□□ 0.73
LHX1P48742 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.63■□□□□ 0.73
LHX1P48742 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.63■□□□□ 0.73
LHX1P48742 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.63■□□□□ 0.73
LHX1P48742 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.63■□□□□ 0.73
LHX1P48742 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LHX1P48742 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX1P48742 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.63■□□□□ 0.73
LHX1P48742 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX1P48742 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms