Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
SOX3P41225 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX3P41225 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.48■□□□□ 0.39
SOX3P41225 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SOX3P41225 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.48■□□□□ 0.39
SOX3P41225 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.48■□□□□ 0.39
SOX3P41225 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX3P41225 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX3P41225 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX3P41225 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SOX3P41225 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX3P41225 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.47■□□□□ 0.39
SOX3P41225 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX3P41225 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX3P41225 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX3P41225 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SOX3P41225 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX3P41225 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.47■□□□□ 0.39
SOX3P41225 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.47■□□□□ 0.39
SOX3P41225 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.47■□□□□ 0.39
SOX3P41225 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
SOX3P41225 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SOX3P41225 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.47■□□□□ 0.39
SOX3P41225 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.47■□□□□ 0.39
SOX3P41225 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SOX3P41225 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SOX3P41225 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX3P41225 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
SOX3P41225 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX3P41225 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SOX3P41225 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
SOX3P41225 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SOX3P41225 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.46■□□□□ 0.39
SOX3P41225 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 MIR1224-201ENST00000408193 85 ntBASIC17.46■□□□□ 0.39
SOX3P41225 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX3P41225 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.46■□□□□ 0.39
SOX3P41225 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.46■□□□□ 0.39
SOX3P41225 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX3P41225 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.46■□□□□ 0.39
SOX3P41225 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SOX3P41225 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX3P41225 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SOX3P41225 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
SOX3P41225 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SOX3P41225 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.46■□□□□ 0.38
SOX3P41225 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX3P41225 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX3P41225 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.45■□□□□ 0.38
SOX3P41225 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX3P41225 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms