Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC22.58■■□□□ 1.2
BRCA1P38398 DANCR-204ENST00000444958 709 ntTSL 3 BASIC22.58■■□□□ 1.2
BRCA1P38398 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC22.58■■□□□ 1.2
BRCA1P38398 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
BRCA1P38398 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 GABARAPL3-202ENST00000624044 1851 ntBASIC22.57■■□□□ 1.2
BRCA1P38398 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
BRCA1P38398 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 MTDHP4-201ENST00000600287 670 ntBASIC22.57■■□□□ 1.2
BRCA1P38398 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC22.57■■□□□ 1.2
BRCA1P38398 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC22.57■■□□□ 1.2
BRCA1P38398 AC107918.4-202ENST00000641623 219 ntBASIC22.57■■□□□ 1.2
BRCA1P38398 AC068587.9-201ENST00000641814 219 ntBASIC22.57■■□□□ 1.2
BRCA1P38398 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
BRCA1P38398 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC22.57■■□□□ 1.2
BRCA1P38398 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
BRCA1P38398 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC22.56■■□□□ 1.2
BRCA1P38398 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.56■■□□□ 1.2
BRCA1P38398 BEX3-201ENST00000361298 921 ntTSL 2 BASIC22.56■■□□□ 1.2
BRCA1P38398 AC254562.1-201ENST00000417586 456 ntBASIC22.56■■□□□ 1.2
BRCA1P38398 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC22.56■■□□□ 1.2
BRCA1P38398 CRCP-205ENST00000431089 942 ntTSL 2 BASIC22.56■■□□□ 1.2
BRCA1P38398 ORC5-208ENST00000626700 344 ntTSL 3 BASIC22.56■■□□□ 1.2
BRCA1P38398 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC22.56■■□□□ 1.2
BRCA1P38398 AC002310.6-201ENST00000624451 1377 ntBASIC22.56■■□□□ 1.2
BRCA1P38398 AL356309.3-201ENST00000624132 1934 ntBASIC22.56■■□□□ 1.2
BRCA1P38398 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.56■■□□□ 1.2
BRCA1P38398 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.56■■□□□ 1.2
BRCA1P38398 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.56■■□□□ 1.2
BRCA1P38398 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC22.56■■□□□ 1.2
BRCA1P38398 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
BRCA1P38398 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC22.56■■□□□ 1.2
BRCA1P38398 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC22.56■■□□□ 1.2
BRCA1P38398 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
BRCA1P38398 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.55■■□□□ 1.2
BRCA1P38398 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC22.55■■□□□ 1.2
BRCA1P38398 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
BRCA1P38398 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
BRCA1P38398 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
BRCA1P38398 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.55■■□□□ 1.2
BRCA1P38398 INIP-202ENST00000374236 874 ntTSL 2 BASIC22.55■■□□□ 1.2
BRCA1P38398 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
BRCA1P38398 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.55■■□□□ 1.2
BRCA1P38398 AC009947.1-201ENST00000444350 727 ntBASIC22.55■■□□□ 1.2
BRCA1P38398 YBX1P5-201ENST00000509441 847 ntBASIC22.55■■□□□ 1.2
BRCA1P38398 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
BRCA1P38398 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC22.55■■□□□ 1.2
BRCA1P38398 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
BRCA1P38398 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC22.55■■□□□ 1.2
BRCA1P38398 AC027612.4-201ENST00000605371 583 ntBASIC22.55■■□□□ 1.2
BRCA1P38398 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.55■■□□□ 1.2
BRCA1P38398 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
BRCA1P38398 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
BRCA1P38398 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC22.55■■□□□ 1.2
BRCA1P38398 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
BRCA1P38398 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
BRCA1P38398 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC22.55■■□□□ 1.2
BRCA1P38398 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
BRCA1P38398 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC22.54■■□□□ 1.2
BRCA1P38398 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
BRCA1P38398 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC22.54■■□□□ 1.2
BRCA1P38398 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC22.54■■□□□ 1.2
BRCA1P38398 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC22.54■■□□□ 1.2
BRCA1P38398 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC22.54■■□□□ 1.2
BRCA1P38398 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
BRCA1P38398 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
BRCA1P38398 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
BRCA1P38398 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
BRCA1P38398 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
BRCA1P38398 CENPM-204ENST00000402420 688 ntTSL 5 BASIC22.54■■□□□ 1.2
BRCA1P38398 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 CFL1-202ENST00000524553 860 ntTSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC22.54■■□□□ 1.2
BRCA1P38398 RNF151-202ENST00000569210 853 ntTSL 2 BASIC22.54■■□□□ 1.2
BRCA1P38398 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.54■■□□□ 1.2
BRCA1P38398 MTDHP5-201ENST00000598980 586 ntBASIC22.54■■□□□ 1.2
BRCA1P38398 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
BRCA1P38398 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
BRCA1P38398 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms