Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL158047.1-201ENST00000445918 881 ntBASIC17.72■□□□□ 0.43
SDC1P18827 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SDC1P18827 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.72■□□□□ 0.43
SDC1P18827 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.71■□□□□ 0.43
SDC1P18827 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.71■□□□□ 0.43
SDC1P18827 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.71■□□□□ 0.43
SDC1P18827 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.71■□□□□ 0.43
SDC1P18827 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 ABHD17AP1-201ENST00000358206 933 ntBASIC17.71■□□□□ 0.43
SDC1P18827 MIR564-202ENST00000385049 94 ntBASIC17.71■□□□□ 0.43
SDC1P18827 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 AC012618.2-201ENST00000428058 849 ntBASIC17.71■□□□□ 0.43
SDC1P18827 UBE2SP1-201ENST00000450587 669 ntBASIC17.71■□□□□ 0.43
SDC1P18827 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.71■□□□□ 0.43
SDC1P18827 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.71■□□□□ 0.43
SDC1P18827 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.71■□□□□ 0.43
SDC1P18827 AC233702.5-201ENST00000584107 538 ntBASIC17.71■□□□□ 0.43
SDC1P18827 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SDC1P18827 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.71■□□□□ 0.43
SDC1P18827 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 LETM1P2-201ENST00000597330 2178 ntBASIC17.71■□□□□ 0.43
SDC1P18827 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDC1P18827 AC093677.2-201ENST00000600169 1863 ntBASIC17.71■□□□□ 0.43
SDC1P18827 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.71■□□□□ 0.43
SDC1P18827 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDC1P18827 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
SDC1P18827 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDC1P18827 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.42
SDC1P18827 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SDC1P18827 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.7■□□□□ 0.42
SDC1P18827 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.7■□□□□ 0.42
SDC1P18827 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SDC1P18827 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SDC1P18827 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.7■□□□□ 0.42
SDC1P18827 MCCD1P1-208ENST00000445732 328 ntBASIC17.7■□□□□ 0.42
SDC1P18827 AC097488.1-201ENST00000507834 756 ntBASIC17.7■□□□□ 0.42
SDC1P18827 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.7■□□□□ 0.42
SDC1P18827 REXO1L10P-201ENST00000615707 1290 ntBASIC17.7■□□□□ 0.42
SDC1P18827 REXO1L12P-201ENST00000622156 912 ntBASIC17.7■□□□□ 0.42
SDC1P18827 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.7■□□□□ 0.42
SDC1P18827 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
SDC1P18827 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.7■□□□□ 0.42
SDC1P18827 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC1P18827 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
SDC1P18827 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.69■□□□□ 0.42
SDC1P18827 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 ESPNP-201ENST00000270691 2015 ntBASIC17.69■□□□□ 0.42
SDC1P18827 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SDC1P18827 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.69■□□□□ 0.42
SDC1P18827 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.69■□□□□ 0.42
SDC1P18827 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.69■□□□□ 0.42
SDC1P18827 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.69■□□□□ 0.42
SDC1P18827 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.69■□□□□ 0.42
SDC1P18827 AL049637.2-201ENST00000641778 930 ntBASIC17.69■□□□□ 0.42
SDC1P18827 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SDC1P18827 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC1P18827 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SDC1P18827 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SDC1P18827 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms