Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC009078.2-202ENST00000463353 338 ntBASIC22.34■■□□□ 1.17
COL1A1P02452 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL1A1P02452 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC22.34■■□□□ 1.17
COL1A1P02452 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC22.34■■□□□ 1.17
COL1A1P02452 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
COL1A1P02452 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL1A1P02452 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC22.34■■□□□ 1.17
COL1A1P02452 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL1A1P02452 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
COL1A1P02452 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL1A1P02452 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL1A1P02452 SLC25A24-204ENST00000569674 2357 ntBASIC22.34■■□□□ 1.17
COL1A1P02452 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.34■■□□□ 1.17
COL1A1P02452 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL1A1P02452 LINC00265-3P-201ENST00000447588 903 ntBASIC22.34■■□□□ 1.17
COL1A1P02452 TOB2P1-201ENST00000469761 992 ntBASIC22.34■■□□□ 1.17
COL1A1P02452 AC106795.1-205ENST00000512851 1056 ntBASIC22.34■■□□□ 1.17
COL1A1P02452 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC22.34■■□□□ 1.17
COL1A1P02452 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL1A1P02452 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.33■■□□□ 1.17
COL1A1P02452 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL1A1P02452 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL1A1P02452 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC22.33■■□□□ 1.17
COL1A1P02452 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC22.33■■□□□ 1.17
COL1A1P02452 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
COL1A1P02452 AL163051.1-201ENST00000569214 1512 ntBASIC22.33■■□□□ 1.17
COL1A1P02452 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.33■■□□□ 1.17
COL1A1P02452 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL1A1P02452 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.33■■□□□ 1.17
COL1A1P02452 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL1A1P02452 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
COL1A1P02452 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC22.33■■□□□ 1.16
COL1A1P02452 AP000593.1-201ENST00000393668 712 ntBASIC22.33■■□□□ 1.16
COL1A1P02452 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.16
COL1A1P02452 AC079781.3-201ENST00000449110 356 ntBASIC22.33■■□□□ 1.16
COL1A1P02452 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL1A1P02452 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC22.33■■□□□ 1.16
COL1A1P02452 AL592071.1-201ENST00000611956 408 ntBASIC22.33■■□□□ 1.16
COL1A1P02452 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC22.33■■□□□ 1.16
COL1A1P02452 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL1A1P02452 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.33■■□□□ 1.16
COL1A1P02452 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL1A1P02452 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC22.32■■□□□ 1.16
COL1A1P02452 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.32■■□□□ 1.16
COL1A1P02452 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.32■■□□□ 1.16
COL1A1P02452 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 AL022342.1-201ENST00000400363 863 ntBASIC22.32■■□□□ 1.16
COL1A1P02452 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
COL1A1P02452 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC22.32■■□□□ 1.16
COL1A1P02452 AL160237.2-201ENST00000556165 472 ntBASIC22.32■■□□□ 1.16
COL1A1P02452 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC22.32■■□□□ 1.16
COL1A1P02452 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
COL1A1P02452 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22.32■■□□□ 1.16
COL1A1P02452 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL1A1P02452 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
COL1A1P02452 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC22.31■■□□□ 1.16
COL1A1P02452 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC22.31■■□□□ 1.16
COL1A1P02452 AC091607.1-201ENST00000490318 1060 ntBASIC22.31■■□□□ 1.16
COL1A1P02452 PNN-202ENST00000553331 656 ntTSL 3 BASIC22.31■■□□□ 1.16
COL1A1P02452 BMF-207ENST00000559701 630 ntTSL 3 BASIC22.31■■□□□ 1.16
COL1A1P02452 AP005901.3-202ENST00000581653 237 ntBASIC22.31■■□□□ 1.16
COL1A1P02452 AC024563.2-201ENST00000603282 481 ntBASIC22.31■■□□□ 1.16
COL1A1P02452 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL1A1P02452 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC22.3■■□□□ 1.16
COL1A1P02452 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 AP000867.3-201ENST00000524675 377 ntBASIC22.3■■□□□ 1.16
COL1A1P02452 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC22.3■■□□□ 1.16
COL1A1P02452 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC22.3■■□□□ 1.16
COL1A1P02452 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC22.3■■□□□ 1.16
COL1A1P02452 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC22.3■■□□□ 1.16
COL1A1P02452 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
COL1A1P02452 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
COL1A1P02452 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL1A1P02452 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms