Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DQA1P01909 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 AC034268.1-201ENST00000441047 882 ntBASIC13.98□□□□□ -0.17
HLA-DQA1P01909 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 PLD4-205ENST00000553861 667 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 RARRES2P6-201ENST00000567333 442 ntBASIC13.98□□□□□ -0.17
HLA-DQA1P01909 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 AC004854.2-201ENST00000608450 1441 ntBASIC13.98□□□□□ -0.17
HLA-DQA1P01909 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DQA1P01909 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 ANKRD18DP-204ENST00000455355 1975 ntBASIC13.97□□□□□ -0.17
HLA-DQA1P01909 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 GALNS-213ENST00000569433 723 ntTSL 3 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 AC087623.3-201ENST00000607047 1098 ntBASIC13.97□□□□□ -0.17
HLA-DQA1P01909 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.97□□□□□ -0.17
HLA-DQA1P01909 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 AL121761.2-201ENST00000598007 1648 ntBASIC13.97□□□□□ -0.17
HLA-DQA1P01909 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DQA1P01909 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DQA1P01909 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms