Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.13■□□□□ 0.49
TNFP01375 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TNFP01375 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TNFP01375 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.13■□□□□ 0.49
TNFP01375 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.13■□□□□ 0.49
TNFP01375 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.13■□□□□ 0.49
TNFP01375 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.13■□□□□ 0.49
TNFP01375 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.13■□□□□ 0.49
TNFP01375 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.13■□□□□ 0.49
TNFP01375 AC024563.2-201ENST00000603282 481 ntBASIC18.13■□□□□ 0.49
TNFP01375 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.13■□□□□ 0.49
TNFP01375 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.13■□□□□ 0.49
TNFP01375 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TNFP01375 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.13■□□□□ 0.49
TNFP01375 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFP01375 AL049812.1-201ENST00000432563 2267 ntBASIC18.12■□□□□ 0.49
TNFP01375 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TNFP01375 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TNFP01375 CHCHD2P8-201ENST00000429873 447 ntBASIC18.12■□□□□ 0.49
TNFP01375 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.12■□□□□ 0.49
TNFP01375 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.12■□□□□ 0.49
TNFP01375 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.12■□□□□ 0.49
TNFP01375 RNF126P1-202ENST00000569893 925 ntBASIC18.12■□□□□ 0.49
TNFP01375 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 CLEC4GP1-201ENST00000596555 870 ntBASIC18.12■□□□□ 0.49
TNFP01375 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TNFP01375 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFP01375 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 AC116562.4-201ENST00000641316 2276 ntBASIC18.11■□□□□ 0.49
TNFP01375 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TNFP01375 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
TNFP01375 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.11■□□□□ 0.49
TNFP01375 AC005332.3-201ENST00000589904 676 ntBASIC18.11■□□□□ 0.49
TNFP01375 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TNFP01375 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TNFP01375 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.11■□□□□ 0.49
TNFP01375 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFP01375 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
TNFP01375 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TNFP01375 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TNFP01375 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.1■□□□□ 0.49
TNFP01375 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFP01375 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFP01375 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFP01375 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFP01375 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.1■□□□□ 0.49
TNFP01375 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TNFP01375 Z83836.1-201ENST00000624605 1642 ntBASIC18.1■□□□□ 0.49
TNFP01375 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TNFP01375 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms