Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SSSCA1O60232 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.17■□□□□ 0.02
SSSCA1O60232 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC15.17■□□□□ 0.02
SSSCA1O60232 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC15.17■□□□□ 0.02
SSSCA1O60232 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC15.17■□□□□ 0.02
SSSCA1O60232 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 AC138028.4-201ENST00000564984 1845 ntBASIC15.17■□□□□ 0.02
SSSCA1O60232 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.17■□□□□ 0.02
SSSCA1O60232 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
SSSCA1O60232 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
SSSCA1O60232 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SSSCA1O60232 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
SSSCA1O60232 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.16■□□□□ 0.02
SSSCA1O60232 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.16■□□□□ 0.02
SSSCA1O60232 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 GUK1-205ENST00000366722 850 ntTSL 3 BASIC15.16■□□□□ 0.02
SSSCA1O60232 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SSSCA1O60232 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC15.16■□□□□ 0.02
SSSCA1O60232 TSPY23P-201ENST00000440136 739 ntBASIC15.16■□□□□ 0.02
SSSCA1O60232 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.16■□□□□ 0.02
SSSCA1O60232 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC15.16■□□□□ 0.02
SSSCA1O60232 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC15.16■□□□□ 0.02
SSSCA1O60232 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.16■□□□□ 0.02
SSSCA1O60232 PHB2-213ENST00000546111 858 ntTSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC15.16■□□□□ 0.02
SSSCA1O60232 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SSSCA1O60232 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.16■□□□□ 0.02
SSSCA1O60232 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.16■□□□□ 0.02
SSSCA1O60232 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.16■□□□□ 0.02
SSSCA1O60232 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SSSCA1O60232 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
SSSCA1O60232 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.15■□□□□ 0.02
SSSCA1O60232 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC15.15■□□□□ 0.02
SSSCA1O60232 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SSSCA1O60232 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SSSCA1O60232 MDK-213ENST00000617138 635 ntTSL 2 BASIC15.15■□□□□ 0.02
SSSCA1O60232 MYC-208ENST00000641036 567 ntBASIC15.15■□□□□ 0.02
SSSCA1O60232 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC15.15■□□□□ 0.02
SSSCA1O60232 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSSCA1O60232 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms