Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB3O15347 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
HMGB3O15347 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HMGB3O15347 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.96□□□□□ -0.01
HMGB3O15347 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HMGB3O15347 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.96□□□□□ -0.01
HMGB3O15347 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 BRI3-207ENST00000539286 699 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC14.96□□□□□ -0.01
HMGB3O15347 AC116351.2-201ENST00000606540 1585 ntBASIC14.96□□□□□ -0.01
HMGB3O15347 TFG-210ENST00000620299 1289 ntTSL 5 BASIC14.96□□□□□ -0.01
HMGB3O15347 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HMGB3O15347 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.96□□□□□ -0.01
HMGB3O15347 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.02
HMGB3O15347 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HMGB3O15347 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HMGB3O15347 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HMGB3O15347 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HMGB3O15347 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.96□□□□□ -0.02
HMGB3O15347 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC14.96□□□□□ -0.02
HMGB3O15347 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
HMGB3O15347 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
HMGB3O15347 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGB3O15347 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.95□□□□□ -0.02
HMGB3O15347 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 AC023632.3-201ENST00000521633 145 ntBASIC14.95□□□□□ -0.02
HMGB3O15347 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HMGB3O15347 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.95□□□□□ -0.02
HMGB3O15347 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGB3O15347 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.95□□□□□ -0.02
HMGB3O15347 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HMGB3O15347 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
HMGB3O15347 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HMGB3O15347 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
HMGB3O15347 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.95□□□□□ -0.02
HMGB3O15347 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.94□□□□□ -0.02
HMGB3O15347 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms