Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGN4O00479 CRYGFP-201ENST00000418459 633 ntBASIC17.3■□□□□ 0.36
HMGN4O00479 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.3■□□□□ 0.36
HMGN4O00479 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGN4O00479 Z99916.2-201ENST00000604037 246 ntBASIC17.3■□□□□ 0.36
HMGN4O00479 AC026471.5-201ENST00000615068 467 ntBASIC17.3■□□□□ 0.36
HMGN4O00479 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
HMGN4O00479 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGN4O00479 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGN4O00479 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGN4O00479 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGN4O00479 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 AC093677.2-201ENST00000600169 1863 ntBASIC17.29■□□□□ 0.36
HMGN4O00479 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HMGN4O00479 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HMGN4O00479 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGN4O00479 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGN4O00479 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGN4O00479 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGN4O00479 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGN4O00479 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGN4O00479 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGN4O00479 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGN4O00479 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGN4O00479 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
HMGN4O00479 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGN4O00479 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGN4O00479 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 ESPNP-201ENST00000270691 2015 ntBASIC17.28■□□□□ 0.36
HMGN4O00479 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HMGN4O00479 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
HMGN4O00479 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.28■□□□□ 0.36
HMGN4O00479 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.28■□□□□ 0.36
HMGN4O00479 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGN4O00479 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGN4O00479 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.28■□□□□ 0.36
HMGN4O00479 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGN4O00479 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 AC034236.2-201ENST00000606662 1610 ntBASIC17.28■□□□□ 0.36
HMGN4O00479 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGN4O00479 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGN4O00479 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
HMGN4O00479 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGN4O00479 AC005332.8-201ENST00000622750 2735 ntBASIC17.27■□□□□ 0.36
HMGN4O00479 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGN4O00479 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGN4O00479 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HMGN4O00479 AC068880.1-201ENST00000507289 2297 ntBASIC17.27■□□□□ 0.36
HMGN4O00479 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.27■□□□□ 0.36
HMGN4O00479 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGN4O00479 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGN4O00479 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGN4O00479 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGN4O00479 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGN4O00479 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms