Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC53A6NM62 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC53A6NM62 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC53A6NM62 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC53A6NM62 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC53A6NM62 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC53A6NM62 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC53A6NM62 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC53A6NM62 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 FAM197Y1-201ENST00000421178 764 ntBASIC20.04■□□□□ 0.8
LRRC53A6NM62 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.04■□□□□ 0.8
LRRC53A6NM62 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 AP000692.2-201ENST00000608391 879 ntBASIC20.04■□□□□ 0.8
LRRC53A6NM62 FAM197Y4-202ENST00000622692 608 ntBASIC20.04■□□□□ 0.8
LRRC53A6NM62 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 FSCN1P1-201ENST00000568912 1481 ntBASIC20.04■□□□□ 0.8
LRRC53A6NM62 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC53A6NM62 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.04■□□□□ 0.8
LRRC53A6NM62 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.03■□□□□ 0.8
LRRC53A6NM62 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC53A6NM62 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LRRC53A6NM62 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 KRT18P41-201ENST00000518924 1277 ntBASIC20.02■□□□□ 0.8
LRRC53A6NM62 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.02■□□□□ 0.8
LRRC53A6NM62 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC53A6NM62 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.02■□□□□ 0.79
LRRC53A6NM62 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms