Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.91■□□□□ 0.78
SNX9Q9Y5X1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 RASA4DP-201ENST00000460726 1199 ntBASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 AC034232.1-201ENST00000506026 1064 ntBASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 AC104390.1-201ENST00000555663 520 ntBASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 MYC-208ENST00000641036 567 ntBASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SNX9Q9Y5X1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SNX9Q9Y5X1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 AC112907.2-201ENST00000448639 330 ntBASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.89■□□□□ 0.77
SNX9Q9Y5X1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 MIR3917-201ENST00000580971 93 ntBASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AC010240.3-201ENST00000607688 395 ntBASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AL157888.1-201ENST00000631930 593 ntBASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AC087289.5-201ENST00000586076 3175 ntBASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms