Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AC092119.3-201ENST00000612618 583 ntBASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.51■■□□□ 1.03
CTDP1Q9Y5B0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 TSSC2-201ENST00000450217 709 ntBASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 CLEC4GP1-201ENST00000596555 870 ntBASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.5■■□□□ 1.03
CTDP1Q9Y5B0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 AL162741.1-201ENST00000565563 1558 ntBASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 HTR7P1-202ENST00000624664 4411 ntBASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 HLA-F-220ENST00000434407 884 ntBASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 AC092329.2-201ENST00000598402 547 ntBASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CTDP1Q9Y5B0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 AL032819.2-201ENST00000624543 2162 ntBASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 AC006333.2-201ENST00000607957 2099 ntBASIC21.48■■□□□ 1.03
CTDP1Q9Y5B0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 AFG3L1P-217ENST00000557444 2447 ntBASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CTDP1Q9Y5B0 AL450487.1-201ENST00000426799 995 ntBASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms