Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.09■□□□□ 0.01
FOXA2Q9Y261 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
FOXA2Q9Y261 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA2Q9Y261 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA2Q9Y261 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA2Q9Y261 FSCN1P1-201ENST00000568912 1481 ntBASIC15.08■□□□□ 0.01
FOXA2Q9Y261 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
FOXA2Q9Y261 MTMR9LP-203ENST00000426597 1545 ntBASIC15.08■□□□□ 0.01
FOXA2Q9Y261 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.08■□□□□ 0.01
FOXA2Q9Y261 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 AC004951.3-201ENST00000418645 1148 ntBASIC15.08■□□□□ 0
FOXA2Q9Y261 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC15.08■□□□□ 0
FOXA2Q9Y261 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.08■□□□□ 0
FOXA2Q9Y261 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.08■□□□□ 0
FOXA2Q9Y261 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.08■□□□□ 0
FOXA2Q9Y261 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.08■□□□□ 0
FOXA2Q9Y261 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.08■□□□□ 0
FOXA2Q9Y261 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.08■□□□□ 0
FOXA2Q9Y261 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
FOXA2Q9Y261 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.08■□□□□ 0
FOXA2Q9Y261 LETM1P2-201ENST00000597330 2178 ntBASIC15.08■□□□□ 0
FOXA2Q9Y261 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
FOXA2Q9Y261 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
FOXA2Q9Y261 KRT8P32-201ENST00000512863 1461 ntBASIC15.08■□□□□ 0
FOXA2Q9Y261 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 NOC2LP2-201ENST00000407594 1944 ntBASIC15.07■□□□□ 0
FOXA2Q9Y261 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.07■□□□□ 0
FOXA2Q9Y261 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
FOXA2Q9Y261 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.07■□□□□ 0
FOXA2Q9Y261 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
FOXA2Q9Y261 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.07■□□□□ 0
FOXA2Q9Y261 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.07■□□□□ 0
FOXA2Q9Y261 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.07■□□□□ 0
FOXA2Q9Y261 TSPY7P-201ENST00000431358 1114 ntBASIC15.07■□□□□ 0
FOXA2Q9Y261 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
FOXA2Q9Y261 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.07■□□□□ 0
FOXA2Q9Y261 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC15.07■□□□□ 0
FOXA2Q9Y261 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.07■□□□□ 0
FOXA2Q9Y261 MIR6786-201ENST00000616843 113 ntBASIC15.07■□□□□ 0
FOXA2Q9Y261 AC011298.2-201ENST00000617989 482 ntBASIC15.07■□□□□ 0
FOXA2Q9Y261 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
FOXA2Q9Y261 KRT8P11-201ENST00000409686 1436 ntBASIC15.07■□□□□ 0
FOXA2Q9Y261 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC15.07■□□□□ 0
FOXA2Q9Y261 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
FOXA2Q9Y261 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
FOXA2Q9Y261 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
FOXA2Q9Y261 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.06■□□□□ 0
FOXA2Q9Y261 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
FOXA2Q9Y261 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.06■□□□□ 0
FOXA2Q9Y261 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
FOXA2Q9Y261 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.06■□□□□ 0
FOXA2Q9Y261 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.06■□□□□ 0
FOXA2Q9Y261 DERL1-203ENST00000419562 918 ntTSL 2 BASIC15.06■□□□□ 0
FOXA2Q9Y261 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.06■□□□□ 0
FOXA2Q9Y261 MIR4497-201ENST00000583208 89 ntBASIC15.06■□□□□ 0
FOXA2Q9Y261 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.06■□□□□ 0
FOXA2Q9Y261 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
FOXA2Q9Y261 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 KRT8P3-201ENST00000519669 1449 ntBASIC15.06■□□□□ 0
FOXA2Q9Y261 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA2Q9Y261 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
FOXA2Q9Y261 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.06■□□□□ 0
FOXA2Q9Y261 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms