Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.39■■□□□ 1.01
DDX41Q9UJV9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.39■■□□□ 1.01
DDX41Q9UJV9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.39■■□□□ 1.01
DDX41Q9UJV9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
DDX41Q9UJV9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.39■■□□□ 1.01
DDX41Q9UJV9 TREX1-205ENST00000625293 1783 ntBASIC21.38■■□□□ 1.01
DDX41Q9UJV9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 UPK3BP1-201ENST00000428678 509 ntBASIC21.38■■□□□ 1.01
DDX41Q9UJV9 AL671277.2-201ENST00000458060 996 ntBASIC21.38■■□□□ 1.01
DDX41Q9UJV9 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 GCSHP2-201ENST00000560971 527 ntBASIC21.38■■□□□ 1.01
DDX41Q9UJV9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
DDX41Q9UJV9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 AP000550.4-202ENST00000639755 178 ntBASIC21.37■■□□□ 1.01
DDX41Q9UJV9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
DDX41Q9UJV9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 PCED1CP-201ENST00000419887 785 ntBASIC21.36■■□□□ 1.01
DDX41Q9UJV9 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.36■■□□□ 1.01
DDX41Q9UJV9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
DDX41Q9UJV9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.35■■□□□ 1.01
DDX41Q9UJV9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 GPAT2P1-201ENST00000444924 1672 ntBASIC21.35■■□□□ 1.01
DDX41Q9UJV9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX41Q9UJV9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms