Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SIX4Q9UIU6 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
SIX4Q9UIU6 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.89■□□□□ 0.78
SIX4Q9UIU6 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 AC005082.1-201ENST00000413042 2259 ntBASIC19.89■□□□□ 0.77
SIX4Q9UIU6 SPDYE13P-201ENST00000445314 798 ntBASIC19.89■□□□□ 0.77
SIX4Q9UIU6 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 AC083849.1-201ENST00000615227 514 ntBASIC19.89■□□□□ 0.77
SIX4Q9UIU6 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX4Q9UIU6 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 AL671277.2-201ENST00000458060 996 ntBASIC19.88■□□□□ 0.77
SIX4Q9UIU6 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.88■□□□□ 0.77
SIX4Q9UIU6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 AC126763.1-201ENST00000552015 2118 ntBASIC19.87■□□□□ 0.77
SIX4Q9UIU6 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 HBZP1-201ENST00000354915 429 ntBASIC19.87■□□□□ 0.77
SIX4Q9UIU6 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX4Q9UIU6 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 ARMC10P1-201ENST00000313754 855 ntBASIC19.86■□□□□ 0.77
SIX4Q9UIU6 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 AC087388.1-201ENST00000571370 1112 ntBASIC19.86■□□□□ 0.77
SIX4Q9UIU6 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX4Q9UIU6 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 HLA-F-220ENST00000434407 884 ntBASIC19.85■□□□□ 0.77
SIX4Q9UIU6 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.85■□□□□ 0.77
SIX4Q9UIU6 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.85■□□□□ 0.77
SIX4Q9UIU6 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms