Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.57■□□□□ 0.56
TREX1Q9NSU2 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 NOC2LP1-202ENST00000452600 2235 ntBASIC18.56■□□□□ 0.56
TREX1Q9NSU2 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 TSPY14P-201ENST00000303979 915 ntBASIC18.56■□□□□ 0.56
TREX1Q9NSU2 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 CR769767.2-201ENST00000622735 460 ntBASIC18.56■□□□□ 0.56
TREX1Q9NSU2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 HOXB1-202ENST00000577092 1414 ntBASIC18.56■□□□□ 0.56
TREX1Q9NSU2 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 AC135776.1-201ENST00000319817 2481 ntBASIC18.56■□□□□ 0.56
TREX1Q9NSU2 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TREX1Q9NSU2 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 AC093677.2-201ENST00000600169 1863 ntBASIC18.55■□□□□ 0.56
TREX1Q9NSU2 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 BX088651.1-201ENST00000540551 451 ntBASIC18.55■□□□□ 0.56
TREX1Q9NSU2 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 C2orf69P3-201ENST00000565542 1120 ntBASIC18.55■□□□□ 0.56
TREX1Q9NSU2 AC116562.4-202ENST00000641738 218 ntBASIC18.55■□□□□ 0.56
TREX1Q9NSU2 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TREX1Q9NSU2 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AC010653.2-201ENST00000623505 997 ntBASIC18.54■□□□□ 0.56
TREX1Q9NSU2 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 KRT8P9-201ENST00000558927 1449 ntBASIC18.54■□□□□ 0.56
TREX1Q9NSU2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 ESPNP-201ENST00000270691 2015 ntBASIC18.54■□□□□ 0.56
TREX1Q9NSU2 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TREX1Q9NSU2 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 CYP2D8P-201ENST00000433633 1490 ntBASIC18.53■□□□□ 0.56
TREX1Q9NSU2 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 INGX-201ENST00000359239 846 ntBASIC18.53■□□□□ 0.56
TREX1Q9NSU2 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TREX1Q9NSU2 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms