Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 POM121L3P-201ENST00000419331 1163 ntBASIC18.37■□□□□ 0.53
VPS13AQ96RL7 AL645939.2-201ENST00000427340 991 ntBASIC18.37■□□□□ 0.53
VPS13AQ96RL7 COX20P2-201ENST00000452636 358 ntBASIC18.37■□□□□ 0.53
VPS13AQ96RL7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS13AQ96RL7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 AC007967.2-201ENST00000432613 625 ntBASIC18.36■□□□□ 0.53
VPS13AQ96RL7 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 MTDHP5-201ENST00000598980 586 ntBASIC18.36■□□□□ 0.53
VPS13AQ96RL7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS13AQ96RL7 KRT18P28-201ENST00000453838 1332 ntBASIC18.36■□□□□ 0.53
VPS13AQ96RL7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 GUSBP12-201ENST00000513727 720 ntBASIC18.35■□□□□ 0.53
VPS13AQ96RL7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 AL096865.1-201ENST00000606796 927 ntBASIC18.35■□□□□ 0.53
VPS13AQ96RL7 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 AC114341.1-201ENST00000618070 349 ntBASIC18.35■□□□□ 0.53
VPS13AQ96RL7 LINC01521-201ENST00000504184 1943 ntBASIC18.35■□□□□ 0.53
VPS13AQ96RL7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS13AQ96RL7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 AC025062.2-201ENST00000605477 670 ntBASIC18.34■□□□□ 0.53
VPS13AQ96RL7 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 AC023274.1-201ENST00000418278 595 ntBASIC18.34■□□□□ 0.53
VPS13AQ96RL7 AC092364.2-202ENST00000597012 1073 ntBASIC18.34■□□□□ 0.53
VPS13AQ96RL7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 HLA-J-201ENST00000462773 1622 ntBASIC18.34■□□□□ 0.53
VPS13AQ96RL7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.34■□□□□ 0.53
VPS13AQ96RL7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 KRT8P3-201ENST00000519669 1449 ntBASIC18.33■□□□□ 0.53
VPS13AQ96RL7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS13AQ96RL7 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS13AQ96RL7 RBM17P3-201ENST00000417687 1192 ntBASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms