Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 AC011558.1-201ENST00000623459 338 ntBASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.55■□□□□ 0.4
PTCHD1Q96NR3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 MIR564-202ENST00000385049 94 ntBASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 RNF152P1-201ENST00000397754 604 ntBASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 AC083906.6-201ENST00000641366 219 ntBASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTCHD1Q96NR3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 AC006333.2-201ENST00000607957 2099 ntBASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 BCL2-203ENST00000589955 5011 ntBASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTCHD1Q96NR3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 TSPY5P-201ENST00000426936 936 ntBASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 AC010331.1-201ENST00000611423 582 ntBASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTCHD1Q96NR3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms