Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 NOC2LP1-202ENST00000452600 2235 ntBASIC13.97□□□□□ -0.17
LINC00477Q96M19 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 KRT18P6-201ENST00000555540 1265 ntBASIC13.97□□□□□ -0.17
LINC00477Q96M19 EMC9-206ENST00000560403 872 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LINC00477Q96M19 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00477Q96M19 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 HTR7P1-201ENST00000538670 1336 ntBASIC13.96□□□□□ -0.17
LINC00477Q96M19 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 AC091390.4-202ENST00000476426 537 ntBASIC13.96□□□□□ -0.17
LINC00477Q96M19 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 AL031985.4-201ENST00000642138 673 ntBASIC13.96□□□□□ -0.17
LINC00477Q96M19 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00477Q96M19 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00477Q96M19 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC13.96□□□□□ -0.18
LINC00477Q96M19 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC13.96□□□□□ -0.18
LINC00477Q96M19 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
LINC00477Q96M19 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00477Q96M19 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
LINC00477Q96M19 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.18
LINC00477Q96M19 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00477Q96M19 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms