Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AC005332.7-201ENST00000614046 2005 ntBASIC20.16■□□□□ 0.82
VPS52Q8N1B4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 AC098818.2-201ENST00000564925 2320 ntBASIC20.16■□□□□ 0.82
VPS52Q8N1B4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS52Q8N1B4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 AC092119.3-201ENST00000612618 583 ntBASIC20.15■□□□□ 0.82
VPS52Q8N1B4 NPAP1P7-201ENST00000613027 823 ntBASIC20.15■□□□□ 0.82
VPS52Q8N1B4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.15■□□□□ 0.82
VPS52Q8N1B4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS52Q8N1B4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 AL691432.3-201ENST00000621860 400 ntBASIC20.14■□□□□ 0.81
VPS52Q8N1B4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
VPS52Q8N1B4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 MCCD1P1-208ENST00000445732 328 ntBASIC20.13■□□□□ 0.81
VPS52Q8N1B4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS52Q8N1B4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.12■□□□□ 0.81
VPS52Q8N1B4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS52Q8N1B4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms