Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 AC133561.4-201ENST00000566112 224 ntBASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 AC110285.6-201ENST00000617652 491 ntBASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 RASA4CP-201ENST00000424092 1398 ntBASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 AP004607.4-201ENST00000530158 1459 ntBASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.57■□□□□ 0.08
CCDC28AQ8IWP9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 AC091305.1-201ENST00000479476 895 ntBASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 TSPY26P-201ENST00000476365 1326 ntBASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28AQ8IWP9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28AQ8IWP9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 AP001330.3-201ENST00000520123 633 ntBASIC15.54■□□□□ 0.08
CCDC28AQ8IWP9 AF213884.3-201ENST00000563833 479 ntBASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms