Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 MFAP1P1-201ENST00000442257 1255 ntBASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 AC116562.2-201ENST00000507042 360 ntBASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 DGCR10-201ENST00000609839 495 ntBASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC40Q4G0X9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 AL355355.2-201ENST00000442321 338 ntBASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC40Q4G0X9 AC007613.1-201ENST00000572811 2597 ntBASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 AC096733.2-201ENST00000609937 1394 ntBASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 AC097488.1-201ENST00000507834 756 ntBASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 AC073592.3-201ENST00000625118 1834 ntBASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
CCDC40Q4G0X9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 MYC-208ENST00000641036 567 ntBASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 AC135050.7-201ENST00000624508 2218 ntBASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms