Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF4P78317 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
RNF4P78317 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.23■□□□□ 0.35
RNF4P78317 NTF6B-201ENST00000591913 560 ntBASIC17.23■□□□□ 0.35
RNF4P78317 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
RNF4P78317 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.23■□□□□ 0.35
RNF4P78317 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF4P78317 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF4P78317 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
RNF4P78317 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF4P78317 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.22■□□□□ 0.35
RNF4P78317 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RNF4P78317 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF4P78317 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF4P78317 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 STARP1-201ENST00000397973 869 ntBASIC17.22■□□□□ 0.35
RNF4P78317 AL359075.1-203ENST00000462729 1002 ntBASIC17.22■□□□□ 0.35
RNF4P78317 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF4P78317 KRT18P35-201ENST00000510488 1269 ntBASIC17.22■□□□□ 0.35
RNF4P78317 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF4P78317 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF4P78317 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF4P78317 AL445228.2-201ENST00000605589 952 ntBASIC17.22■□□□□ 0.35
RNF4P78317 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF4P78317 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RNF4P78317 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF4P78317 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RNF4P78317 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF4P78317 AP000974.1-201ENST00000623909 2387 ntBASIC17.22■□□□□ 0.35
RNF4P78317 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF4P78317 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
RNF4P78317 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RNF4P78317 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF4P78317 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.21■□□□□ 0.35
RNF4P78317 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.21■□□□□ 0.35
RNF4P78317 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.21■□□□□ 0.35
RNF4P78317 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF4P78317 AC034232.1-201ENST00000506026 1064 ntBASIC17.21■□□□□ 0.35
RNF4P78317 AC104390.1-201ENST00000555663 520 ntBASIC17.21■□□□□ 0.35
RNF4P78317 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.21■□□□□ 0.35
RNF4P78317 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.21■□□□□ 0.35
RNF4P78317 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF4P78317 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
RNF4P78317 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.21■□□□□ 0.34
RNF4P78317 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF4P78317 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF4P78317 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF4P78317 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF4P78317 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF4P78317 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.2■□□□□ 0.34
RNF4P78317 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.2■□□□□ 0.34
RNF4P78317 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF4P78317 KRT18P41-201ENST00000518924 1277 ntBASIC17.2■□□□□ 0.34
RNF4P78317 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF4P78317 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.2■□□□□ 0.34
RNF4P78317 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RNF4P78317 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
RNF4P78317 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.2■□□□□ 0.34
RNF4P78317 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RNF4P78317 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms