Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.67■□□□□ 0.26
GFRA1P56159 VENTXP5-201ENST00000523979 775 ntBASIC16.67■□□□□ 0.26
GFRA1P56159 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.67■□□□□ 0.26
GFRA1P56159 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 AC116407.4-201ENST00000623319 1061 ntBASIC16.67■□□□□ 0.26
GFRA1P56159 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.67■□□□□ 0.26
GFRA1P56159 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 AL391807.1-203ENST00000604392 2365 ntBASIC16.67■□□□□ 0.26
GFRA1P56159 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.67■□□□□ 0.26
GFRA1P56159 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
GFRA1P56159 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
GFRA1P56159 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.66■□□□□ 0.26
GFRA1P56159 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.66■□□□□ 0.26
GFRA1P56159 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.66■□□□□ 0.26
GFRA1P56159 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
GFRA1P56159 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 AC009065.1-201ENST00000564055 1225 ntBASIC16.66■□□□□ 0.26
GFRA1P56159 AL136038.4-201ENST00000603606 1261 ntBASIC16.66■□□□□ 0.26
GFRA1P56159 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.66■□□□□ 0.26
GFRA1P56159 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
GFRA1P56159 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
GFRA1P56159 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.66■□□□□ 0.26
GFRA1P56159 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
GFRA1P56159 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 IER3-202ENST00000376377 1350 ntBASIC16.65■□□□□ 0.26
GFRA1P56159 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 AC093525.10-201ENST00000625130 1569 ntBASIC16.65■□□□□ 0.26
GFRA1P56159 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
GFRA1P56159 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.65■□□□□ 0.26
GFRA1P56159 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 PVRIG2P-201ENST00000435460 978 ntBASIC16.65■□□□□ 0.26
GFRA1P56159 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.65■□□□□ 0.26
GFRA1P56159 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
GFRA1P56159 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.65■□□□□ 0.26
GFRA1P56159 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.65■□□□□ 0.26
GFRA1P56159 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 AL163051.1-201ENST00000569214 1512 ntBASIC16.65■□□□□ 0.26
GFRA1P56159 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
GFRA1P56159 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.65■□□□□ 0.26
GFRA1P56159 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
GFRA1P56159 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.64■□□□□ 0.26
GFRA1P56159 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.64■□□□□ 0.25
GFRA1P56159 AC112777.1-201ENST00000540175 1423 ntBASIC16.64■□□□□ 0.25
GFRA1P56159 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.64■□□□□ 0.25
GFRA1P56159 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
GFRA1P56159 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.64■□□□□ 0.25
GFRA1P56159 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.64■□□□□ 0.25
GFRA1P56159 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
GFRA1P56159 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.64■□□□□ 0.25
GFRA1P56159 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.63■□□□□ 0.25
GFRA1P56159 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
GFRA1P56159 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms