Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.07■□□□□ 0.48
HNF4AP41235 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HNF4AP41235 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HNF4AP41235 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
HNF4AP41235 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HNF4AP41235 AC005082.1-201ENST00000413042 2259 ntBASIC18.06■□□□□ 0.48
HNF4AP41235 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 KRT8P9-201ENST00000558927 1449 ntBASIC18.06■□□□□ 0.48
HNF4AP41235 AL109659.2-201ENST00000606809 1674 ntBASIC18.06■□□□□ 0.48
HNF4AP41235 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.06■□□□□ 0.48
HNF4AP41235 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.05■□□□□ 0.48
HNF4AP41235 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HNF4AP41235 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.05■□□□□ 0.48
HNF4AP41235 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.05■□□□□ 0.48
HNF4AP41235 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 FITM1-202ENST00000559294 800 ntBASIC18.05■□□□□ 0.48
HNF4AP41235 AP005242.2-201ENST00000580065 1175 ntBASIC18.05■□□□□ 0.48
HNF4AP41235 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.05■□□□□ 0.48
HNF4AP41235 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.05■□□□□ 0.48
HNF4AP41235 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.05■□□□□ 0.48
HNF4AP41235 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.05■□□□□ 0.48
HNF4AP41235 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
HNF4AP41235 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.05■□□□□ 0.48
HNF4AP41235 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HNF4AP41235 AL357033.4-201ENST00000617703 1807 ntBASIC18.05■□□□□ 0.48
HNF4AP41235 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
HNF4AP41235 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
HNF4AP41235 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HNF4AP41235 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 MMP23A-201ENST00000234610 1017 ntBASIC18.04■□□□□ 0.48
HNF4AP41235 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.04■□□□□ 0.48
HNF4AP41235 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HNF4AP41235 AC073592.3-201ENST00000625118 1834 ntBASIC18.04■□□□□ 0.48
HNF4AP41235 AC112777.1-201ENST00000540175 1423 ntBASIC18.04■□□□□ 0.48
HNF4AP41235 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
HNF4AP41235 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HNF4AP41235 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.04■□□□□ 0.48
HNF4AP41235 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.03■□□□□ 0.48
HNF4AP41235 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms