Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
XRCC1P18887 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.56■□□□□ 0.56
XRCC1P18887 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
XRCC1P18887 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.56■□□□□ 0.56
XRCC1P18887 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
XRCC1P18887 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.56■□□□□ 0.56
XRCC1P18887 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.56■□□□□ 0.56
XRCC1P18887 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.56■□□□□ 0.56
XRCC1P18887 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
XRCC1P18887 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
XRCC1P18887 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
XRCC1P18887 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.56■□□□□ 0.56
XRCC1P18887 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.56■□□□□ 0.56
XRCC1P18887 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.55■□□□□ 0.56
XRCC1P18887 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
XRCC1P18887 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
XRCC1P18887 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.55■□□□□ 0.56
XRCC1P18887 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.55■□□□□ 0.56
XRCC1P18887 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.55■□□□□ 0.56
XRCC1P18887 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 ATP5G1P1-201ENST00000448724 379 ntBASIC18.55■□□□□ 0.56
XRCC1P18887 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.55■□□□□ 0.56
XRCC1P18887 AC010331.1-201ENST00000611423 582 ntBASIC18.55■□□□□ 0.56
XRCC1P18887 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.55■□□□□ 0.56
XRCC1P18887 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 BICD1-207ENST00000551848 1962 ntBASIC18.55■□□□□ 0.56
XRCC1P18887 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.55■□□□□ 0.56
XRCC1P18887 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
XRCC1P18887 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.55■□□□□ 0.56
XRCC1P18887 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.55■□□□□ 0.56
XRCC1P18887 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC1P18887 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
XRCC1P18887 AL354751.1-201ENST00000412768 1863 ntBASIC18.54■□□□□ 0.56
XRCC1P18887 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 FZD10-202ENST00000539839 3282 ntBASIC18.54■□□□□ 0.56
XRCC1P18887 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
XRCC1P18887 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.54■□□□□ 0.56
XRCC1P18887 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
XRCC1P18887 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
XRCC1P18887 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
XRCC1P18887 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.54■□□□□ 0.56
XRCC1P18887 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.54■□□□□ 0.56
XRCC1P18887 KRT18P57-201ENST00000443599 1254 ntBASIC18.54■□□□□ 0.56
XRCC1P18887 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
XRCC1P18887 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.54■□□□□ 0.56
XRCC1P18887 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.54■□□□□ 0.56
XRCC1P18887 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC1P18887 FP475955.4-201ENST00000623131 1990 ntBASIC18.53■□□□□ 0.56
XRCC1P18887 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.53■□□□□ 0.56
XRCC1P18887 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.53■□□□□ 0.56
XRCC1P18887 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC1P18887 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms