Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.75■□□□□ 0.43
SDC1P18827 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.75■□□□□ 0.43
SDC1P18827 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.75■□□□□ 0.43
SDC1P18827 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SDC1P18827 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDC1P18827 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC1P18827 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC1P18827 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC1P18827 AC005332.8-201ENST00000622750 2735 ntBASIC17.75■□□□□ 0.43
SDC1P18827 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SDC1P18827 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SDC1P18827 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.75■□□□□ 0.43
SDC1P18827 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.75■□□□□ 0.43
SDC1P18827 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 MYLKP1-201ENST00000509077 1580 ntBASIC17.74■□□□□ 0.43
SDC1P18827 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.74■□□□□ 0.43
SDC1P18827 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.74■□□□□ 0.43
SDC1P18827 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SDC1P18827 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SDC1P18827 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 KRT18P41-201ENST00000518924 1277 ntBASIC17.74■□□□□ 0.43
SDC1P18827 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.74■□□□□ 0.43
SDC1P18827 SLC25A1P4-201ENST00000567977 778 ntBASIC17.74■□□□□ 0.43
SDC1P18827 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
SDC1P18827 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.74■□□□□ 0.43
SDC1P18827 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.74■□□□□ 0.43
SDC1P18827 GPAT2P1-201ENST00000444924 1672 ntBASIC17.74■□□□□ 0.43
SDC1P18827 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SDC1P18827 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SDC1P18827 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SDC1P18827 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.73■□□□□ 0.43
SDC1P18827 RPS2P55-201ENST00000397318 883 ntBASIC17.73■□□□□ 0.43
SDC1P18827 AL023284.2-201ENST00000405850 579 ntBASIC17.73■□□□□ 0.43
SDC1P18827 GCSHP5-201ENST00000443090 522 ntBASIC17.73■□□□□ 0.43
SDC1P18827 AC107956.1-201ENST00000494359 873 ntBASIC17.73■□□□□ 0.43
SDC1P18827 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC1P18827 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC1P18827 AC113410.3-201ENST00000623366 203 ntBASIC17.73■□□□□ 0.43
SDC1P18827 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC1P18827 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC1P18827 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.73■□□□□ 0.43
SDC1P18827 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.73■□□□□ 0.43
SDC1P18827 AC068880.1-201ENST00000507289 2297 ntBASIC17.73■□□□□ 0.43
SDC1P18827 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SDC1P18827 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SDC1P18827 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC1P18827 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.72■□□□□ 0.43
SDC1P18827 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SDC1P18827 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC1P18827 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.72■□□□□ 0.43
SDC1P18827 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms