Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGB1P09429 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
HMGB1P09429 KRT8P9-201ENST00000558927 1449 ntBASIC21.96■■□□□ 1.11
HMGB1P09429 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.96■■□□□ 1.11
HMGB1P09429 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB1P09429 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.95■■□□□ 1.1
HMGB1P09429 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB1P09429 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB1P09429 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.95■■□□□ 1.1
HMGB1P09429 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
HMGB1P09429 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB1P09429 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB1P09429 KRT8P50-201ENST00000562022 1438 ntBASIC21.95■■□□□ 1.1
HMGB1P09429 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB1P09429 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB1P09429 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB1P09429 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB1P09429 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGB1P09429 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGB1P09429 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.95■■□□□ 1.1
HMGB1P09429 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 NEFHP1-201ENST00000412845 2629 ntBASIC21.94■■□□□ 1.1
HMGB1P09429 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
HMGB1P09429 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGB1P09429 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGB1P09429 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGB1P09429 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGB1P09429 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGB1P09429 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.94■■□□□ 1.1
HMGB1P09429 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGB1P09429 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGB1P09429 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGB1P09429 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGB1P09429 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
HMGB1P09429 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB1P09429 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB1P09429 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
HMGB1P09429 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
HMGB1P09429 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 AL512604.3-201ENST00000569583 964 ntBASIC21.93■■□□□ 1.1
HMGB1P09429 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
HMGB1P09429 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB1P09429 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
HMGB1P09429 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
HMGB1P09429 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.93■■□□□ 1.1
HMGB1P09429 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
HMGB1P09429 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGB1P09429 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGB1P09429 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB1P09429 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
HMGB1P09429 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB1P09429 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.92■■□□□ 1.1
HMGB1P09429 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.92■■□□□ 1.1
HMGB1P09429 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB1P09429 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.92■■□□□ 1.1
HMGB1P09429 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGB1P09429 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.92■■□□□ 1.1
HMGB1P09429 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
HMGB1P09429 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.92■■□□□ 1.1
HMGB1P09429 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGB1P09429 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
HMGB1P09429 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGB1P09429 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGB1P09429 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms