Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.49■□□□□ 0.71
APOEP02649 MIR3180-5-201ENST00000583743 153 ntBASIC19.49■□□□□ 0.71
APOEP02649 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.49■□□□□ 0.71
APOEP02649 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.49■□□□□ 0.71
APOEP02649 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
APOEP02649 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.49■□□□□ 0.71
APOEP02649 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.49■□□□□ 0.71
APOEP02649 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
APOEP02649 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.49■□□□□ 0.71
APOEP02649 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 NEFHP1-201ENST00000412845 2629 ntBASIC19.48■□□□□ 0.71
APOEP02649 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
APOEP02649 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
APOEP02649 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
APOEP02649 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 AL138966.2-201ENST00000621997 464 ntBASIC19.48■□□□□ 0.71
APOEP02649 CR769767.2-201ENST00000622735 460 ntBASIC19.48■□□□□ 0.71
APOEP02649 AC141257.4-201ENST00000634557 245 ntBASIC19.48■□□□□ 0.71
APOEP02649 AC136944.6-201ENST00000634818 245 ntBASIC19.48■□□□□ 0.71
APOEP02649 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 AL109659.2-201ENST00000606809 1674 ntBASIC19.48■□□□□ 0.71
APOEP02649 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 AC036111.1-201ENST00000533973 1582 ntBASIC19.48■□□□□ 0.71
APOEP02649 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
APOEP02649 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.48■□□□□ 0.71
APOEP02649 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
APOEP02649 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
APOEP02649 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.47■□□□□ 0.71
APOEP02649 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.47■□□□□ 0.71
APOEP02649 BX664615.1-201ENST00000443558 458 ntBASIC19.47■□□□□ 0.71
APOEP02649 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
APOEP02649 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.47■□□□□ 0.71
APOEP02649 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
APOEP02649 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.47■□□□□ 0.71
APOEP02649 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.47■□□□□ 0.71
APOEP02649 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
APOEP02649 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.47■□□□□ 0.71
APOEP02649 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.47■□□□□ 0.71
APOEP02649 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
APOEP02649 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
APOEP02649 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
APOEP02649 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
APOEP02649 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.47■□□□□ 0.71
APOEP02649 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.46■□□□□ 0.71
APOEP02649 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.46■□□□□ 0.71
APOEP02649 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
APOEP02649 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.46■□□□□ 0.71
APOEP02649 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
APOEP02649 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
APOEP02649 AP000523.1-201ENST00000398242 1049 ntBASIC19.46■□□□□ 0.71
APOEP02649 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.46■□□□□ 0.71
APOEP02649 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.46■□□□□ 0.71
APOEP02649 WWOX-216ENST00000569818 525 ntBASIC19.46■□□□□ 0.71
APOEP02649 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms