Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC073508.3-201ENST00000619697 1419 ntBASIC17.5■□□□□ 0.39
LDB3O75112 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.5■□□□□ 0.39
LDB3O75112 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.5■□□□□ 0.39
LDB3O75112 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LDB3O75112 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LDB3O75112 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.5■□□□□ 0.39
LDB3O75112 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.5■□□□□ 0.39
LDB3O75112 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LDB3O75112 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
LDB3O75112 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.5■□□□□ 0.39
LDB3O75112 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LDB3O75112 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
LDB3O75112 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 RNF165-205ENST00000588679 2904 ntBASIC17.49■□□□□ 0.39
LDB3O75112 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.49■□□□□ 0.39
LDB3O75112 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
LDB3O75112 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.49■□□□□ 0.39
LDB3O75112 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.49■□□□□ 0.39
LDB3O75112 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
LDB3O75112 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.49■□□□□ 0.39
LDB3O75112 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.49■□□□□ 0.39
LDB3O75112 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.49■□□□□ 0.39
LDB3O75112 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
LDB3O75112 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LDB3O75112 AC099343.3-201ENST00000605834 2503 ntBASIC17.49■□□□□ 0.39
LDB3O75112 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.49■□□□□ 0.39
LDB3O75112 WIZP1-201ENST00000531444 2299 ntBASIC17.49■□□□□ 0.39
LDB3O75112 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
LDB3O75112 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LDB3O75112 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.48■□□□□ 0.39
LDB3O75112 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.48■□□□□ 0.39
LDB3O75112 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 AC005082.1-201ENST00000413042 2259 ntBASIC17.48■□□□□ 0.39
LDB3O75112 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 RCN1P1-201ENST00000400413 996 ntBASIC17.48■□□□□ 0.39
LDB3O75112 KRT18P23-201ENST00000435622 1283 ntBASIC17.48■□□□□ 0.39
LDB3O75112 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.48■□□□□ 0.39
LDB3O75112 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.48■□□□□ 0.39
LDB3O75112 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.48■□□□□ 0.39
LDB3O75112 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LDB3O75112 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDB3O75112 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms