Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.34■□□□□ 0.53
SNX3O60493 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.34■□□□□ 0.53
SNX3O60493 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.34■□□□□ 0.53
SNX3O60493 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SNX3O60493 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 AL390719.1-204ENST00000412397 1219 ntBASIC18.34■□□□□ 0.53
SNX3O60493 CYP2T1P-201ENST00000432607 1285 ntBASIC18.34■□□□□ 0.53
SNX3O60493 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.34■□□□□ 0.53
SNX3O60493 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.34■□□□□ 0.53
SNX3O60493 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.34■□□□□ 0.53
SNX3O60493 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
SNX3O60493 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SNX3O60493 AL023806.1-201ENST00000603994 1649 ntBASIC18.34■□□□□ 0.53
SNX3O60493 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SNX3O60493 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SNX3O60493 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SNX3O60493 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX3O60493 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX3O60493 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX3O60493 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.33■□□□□ 0.53
SNX3O60493 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SNX3O60493 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX3O60493 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.33■□□□□ 0.53
SNX3O60493 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX3O60493 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SNX3O60493 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.33■□□□□ 0.52
SNX3O60493 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.33■□□□□ 0.52
SNX3O60493 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.33■□□□□ 0.52
SNX3O60493 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SNX3O60493 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SNX3O60493 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SNX3O60493 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.33■□□□□ 0.52
SNX3O60493 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.33■□□□□ 0.52
SNX3O60493 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SNX3O60493 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SNX3O60493 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX3O60493 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SNX3O60493 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.32■□□□□ 0.52
SNX3O60493 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX3O60493 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.32■□□□□ 0.52
SNX3O60493 AC005829.2-201ENST00000571422 1056 ntBASIC18.32■□□□□ 0.52
SNX3O60493 AC131212.1-201ENST00000613771 668 ntBASIC18.32■□□□□ 0.52
SNX3O60493 AC008694.1-202ENST00000636953 945 ntBASIC18.32■□□□□ 0.52
SNX3O60493 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
SNX3O60493 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX3O60493 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.32■□□□□ 0.52
SNX3O60493 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 LINC00602-201ENST00000629776 2065 ntBASIC18.32■□□□□ 0.52
SNX3O60493 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SNX3O60493 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNX3O60493 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.31■□□□□ 0.52
SNX3O60493 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.31■□□□□ 0.52
SNX3O60493 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNX3O60493 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SNX3O60493 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms