Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HMGB3O15347 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
HMGB3O15347 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
HMGB3O15347 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 HYI-206ENST00000372434 1025 ntTSL 5 BASIC14.99□□□□□ -0.01
HMGB3O15347 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC14.99□□□□□ -0.01
HMGB3O15347 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
HMGB3O15347 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
HMGB3O15347 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB3O15347 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB3O15347 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 AC126763.1-201ENST00000552015 2118 ntBASIC14.98□□□□□ -0.01
HMGB3O15347 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HMGB3O15347 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB3O15347 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 KRT18P68-201ENST00000392293 1000 ntBASIC14.98□□□□□ -0.01
HMGB3O15347 UQCRFS1P1-201ENST00000435169 820 ntBASIC14.98□□□□□ -0.01
HMGB3O15347 AC142381.2-201ENST00000566120 298 ntBASIC14.98□□□□□ -0.01
HMGB3O15347 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 AC010536.3-201ENST00000620306 533 ntBASIC14.98□□□□□ -0.01
HMGB3O15347 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HMGB3O15347 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB3O15347 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB3O15347 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB3O15347 GCK-205ENST00000437084 1385 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB3O15347 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB3O15347 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
HMGB3O15347 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HMGB3O15347 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB3O15347 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB3O15347 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB3O15347 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.97□□□□□ -0.01
HMGB3O15347 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB3O15347 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 KRT19P1-201ENST00000405746 1186 ntBASIC14.97□□□□□ -0.01
HMGB3O15347 NALT1-201ENST00000429224 738 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 KRT18P14-201ENST00000534205 1250 ntBASIC14.97□□□□□ -0.01
HMGB3O15347 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB3O15347 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB3O15347 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms