Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC020916.1-201ENST00000587762 1774 ntBASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCAL1Q9NZC9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.64■□□□□ 0.74
SMARCAL1Q9NZC9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCAL1Q9NZC9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCAL1Q9NZC9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.64■□□□□ 0.74
SMARCAL1Q9NZC9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCAL1Q9NZC9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 C1QL1P1-201ENST00000568105 661 ntBASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SMARCAL1Q9NZC9 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 UNC93B4-201ENST00000505679 747 ntBASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 UNC93B5-201ENST00000530315 699 ntBASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SMARCAL1Q9NZC9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 AC093677.2-201ENST00000600169 1863 ntBASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 AC099398.1-201ENST00000567919 2776 ntBASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMARCAL1Q9NZC9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.61■□□□□ 0.73
SMARCAL1Q9NZC9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms