Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.99■■□□□ 1.11
DDX4Q9NQI0 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.99■■□□□ 1.11
DDX4Q9NQI0 GPR32P1-201ENST00000601788 811 ntBASIC21.99■■□□□ 1.11
DDX4Q9NQI0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.99■■□□□ 1.11
DDX4Q9NQI0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
DDX4Q9NQI0 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
DDX4Q9NQI0 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
DDX4Q9NQI0 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DDX4Q9NQI0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 AC111152.3-201ENST00000569699 673 ntBASIC21.98■■□□□ 1.11
DDX4Q9NQI0 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 AC024563.2-201ENST00000603282 481 ntBASIC21.98■■□□□ 1.11
DDX4Q9NQI0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.98■■□□□ 1.11
DDX4Q9NQI0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 TSPY19P-201ENST00000418461 509 ntBASIC21.97■■□□□ 1.11
DDX4Q9NQI0 TSPY18P-201ENST00000441642 509 ntBASIC21.97■■□□□ 1.11
DDX4Q9NQI0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 IFNL4P1-201ENST00000607083 540 ntBASIC21.97■■□□□ 1.11
DDX4Q9NQI0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX4Q9NQI0 AC099343.3-201ENST00000605834 2503 ntBASIC21.97■■□□□ 1.11
DDX4Q9NQI0 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 AC005332.7-201ENST00000614046 2005 ntBASIC21.96■■□□□ 1.11
DDX4Q9NQI0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 KRT18P41-201ENST00000518924 1277 ntBASIC21.96■■□□□ 1.11
DDX4Q9NQI0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX4Q9NQI0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.11
DDX4Q9NQI0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.95■■□□□ 1.11
DDX4Q9NQI0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 RN7SL606P-201ENST00000472779 293 ntBASIC21.95■■□□□ 1.1
DDX4Q9NQI0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 FOSL1P1-201ENST00000511041 816 ntBASIC21.95■■□□□ 1.1
DDX4Q9NQI0 AC012615.1-201ENST00000565797 1299 ntBASIC21.95■■□□□ 1.1
DDX4Q9NQI0 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 AC090616.6-201ENST00000582640 721 ntBASIC21.95■■□□□ 1.1
DDX4Q9NQI0 IGHV3-41-201ENST00000613121 348 ntBASIC21.95■■□□□ 1.1
DDX4Q9NQI0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
DDX4Q9NQI0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX4Q9NQI0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms