Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 AC011558.1-201ENST00000623459 338 ntBASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 AC018445.3-201ENST00000624177 1945 ntBASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM39Q9HCM9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 AP000974.1-201ENST00000623909 2387 ntBASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 RNF152P1-201ENST00000397754 604 ntBASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 AL049597.2-201ENST00000565575 961 ntBASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TRIM39Q9HCM9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 TSPY5P-201ENST00000426936 936 ntBASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 AL023973.1-201ENST00000624619 620 ntBASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM39Q9HCM9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.46■□□□□ 0.54
TRIM39Q9HCM9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 MIR1224-201ENST00000408193 85 ntBASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms