Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF38Q9H0F5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF38Q9H0F5 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF38Q9H0F5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF38Q9H0F5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 ATP5G2P1-201ENST00000433580 426 ntBASIC19.29■□□□□ 0.68
RNF38Q9H0F5 HCG4P8-203ENST00000443049 980 ntBASIC19.29■□□□□ 0.68
RNF38Q9H0F5 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.29■□□□□ 0.68
RNF38Q9H0F5 NPAP1P7-201ENST00000613027 823 ntBASIC19.29■□□□□ 0.68
RNF38Q9H0F5 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 AC016734.2-201ENST00000624325 1377 ntBASIC19.29■□□□□ 0.68
RNF38Q9H0F5 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF38Q9H0F5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 RNF126P1-202ENST00000569893 925 ntBASIC19.28■□□□□ 0.68
RNF38Q9H0F5 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF38Q9H0F5 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 PVRIG2P-201ENST00000435460 978 ntBASIC19.27■□□□□ 0.68
RNF38Q9H0F5 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF38Q9H0F5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.27■□□□□ 0.67
RNF38Q9H0F5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF38Q9H0F5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF38Q9H0F5 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF38Q9H0F5 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF38Q9H0F5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF38Q9H0F5 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms