Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 AC004408.2-201ENST00000623613 2777 ntBASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAIPQ9BWF2 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRAIPQ9BWF2 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAIPQ9BWF2 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAIPQ9BWF2 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAIPQ9BWF2 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.39■□□□□ 0.86
TRAIPQ9BWF2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAIPQ9BWF2 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.39■□□□□ 0.86
TRAIPQ9BWF2 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 KRT8P32-201ENST00000512863 1461 ntBASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 AC092597.1-201ENST00000487352 616 ntBASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 KRT18P56-201ENST00000507275 550 ntBASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.39■□□□□ 0.85
TRAIPQ9BWF2 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 RCC2P3-201ENST00000418112 1537 ntBASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 ATP5G2P1-201ENST00000433580 426 ntBASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 MIR3917-201ENST00000580971 93 ntBASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TRAIPQ9BWF2 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAIPQ9BWF2 AL645929.1-201ENST00000420084 975 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms