Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.57■□□□□ 0.56
LRFN3Q9BTN0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 AL139288.1-201ENST00000623748 933 ntBASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
LRFN3Q9BTN0 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 PLK5-205ENST00000642079 1969 ntBASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LRFN3Q9BTN0 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 AC092720.2-201ENST00000602388 1665 ntBASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 PMS2P4-201ENST00000412466 1052 ntBASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 RNA5SP421-201ENST00000516864 134 ntBASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 MIR3180-4-201ENST00000582223 153 ntBASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.54■□□□□ 0.56
LRFN3Q9BTN0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 LAGE3P1-201ENST00000425356 484 ntBASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 AC108751.1-201ENST00000490852 363 ntBASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRFN3Q9BTN0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRFN3Q9BTN0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms