Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
NR1H4Q96RI1 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
NR1H4Q96RI1 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NR1H4Q96RI1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 IRS3P-201ENST00000223076 1006 ntBASIC17.57■□□□□ 0.4
NR1H4Q96RI1 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 AC105265.2-201ENST00000467189 838 ntBASIC17.57■□□□□ 0.4
NR1H4Q96RI1 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 AL023806.1-201ENST00000603994 1649 ntBASIC17.57■□□□□ 0.4
NR1H4Q96RI1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NR1H4Q96RI1 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 AC097381.1-201ENST00000429019 1296 ntBASIC17.56■□□□□ 0.4
NR1H4Q96RI1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 AC138907.5-202ENST00000569484 235 ntBASIC17.56■□□□□ 0.4
NR1H4Q96RI1 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NR1H4Q96RI1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 SDHAP1-207ENST00000440850 2000 ntBASIC17.55■□□□□ 0.4
NR1H4Q96RI1 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.55■□□□□ 0.4
NR1H4Q96RI1 AC093677.2-201ENST00000600169 1863 ntBASIC17.55■□□□□ 0.4
NR1H4Q96RI1 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NR1H4Q96RI1 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms