Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 ECEL1P2-202ENST00000465689 757 ntBASIC14.42□□□□□ -0.1
CCDC140Q96MF4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 WWOX-216ENST00000569818 525 ntBASIC14.42□□□□□ -0.1
CCDC140Q96MF4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC140Q96MF4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 GXYLT1P3-201ENST00000453058 1193 ntBASIC14.41□□□□□ -0.1
CCDC140Q96MF4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 LINC01568-207ENST00000641790 1380 ntBASIC14.41□□□□□ -0.1
CCDC140Q96MF4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC140Q96MF4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms