Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ATG4AQ8WYN0 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ATG4AQ8WYN0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 AC011298.2-201ENST00000617989 482 ntBASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 RCC2P3-201ENST00000418112 1537 ntBASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.35■□□□□ 0.69
ATG4AQ8WYN0 KRT16P1-201ENST00000399124 1418 ntBASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 AL162741.1-201ENST00000565563 1558 ntBASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
ATG4AQ8WYN0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ATG4AQ8WYN0 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ATG4AQ8WYN0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 AC011506.1-201ENST00000474329 610 ntBASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 CKBP1-201ENST00000565489 1086 ntBASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 AF186192.3-201ENST00000583427 947 ntBASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ATG4AQ8WYN0 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ATG4AQ8WYN0 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms