Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RPS4Y2Q8TD47 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.21
RPS4Y2Q8TD47 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
RPS4Y2Q8TD47 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
RPS4Y2Q8TD47 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
RPS4Y2Q8TD47 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RPS4Y2Q8TD47 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 AC008403.3-201ENST00000598924 454 ntBASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 AL445675.2-201ENST00000620291 557 ntBASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RPS4Y2Q8TD47 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 FAM201B-201ENST00000458407 597 ntBASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 UNC93B5-201ENST00000530315 699 ntBASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 HTR7P1-201ENST00000538670 1336 ntBASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 MTDHP1-201ENST00000605323 784 ntBASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
RPS4Y2Q8TD47 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 MYLKP1-201ENST00000509077 1580 ntBASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 FLJ13224-201ENST00000313737 1514 ntBASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RPS4Y2Q8TD47 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms