Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SKA3Q8IX90 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SKA3Q8IX90 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.5■□□□□ 0.23
SKA3Q8IX90 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
SKA3Q8IX90 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.5■□□□□ 0.23
SKA3Q8IX90 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SKA3Q8IX90 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SKA3Q8IX90 TSPY14P-201ENST00000303979 915 ntBASIC16.49■□□□□ 0.23
SKA3Q8IX90 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SKA3Q8IX90 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 CCR12P-201ENST00000446203 998 ntBASIC16.49■□□□□ 0.23
SKA3Q8IX90 TSPY17P-201ENST00000450329 467 ntBASIC16.49■□□□□ 0.23
SKA3Q8IX90 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 NAPSB-206ENST00000562112 1266 ntBASIC16.49■□□□□ 0.23
SKA3Q8IX90 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 AL353719.1-201ENST00000566847 864 ntBASIC16.49■□□□□ 0.23
SKA3Q8IX90 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SKA3Q8IX90 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SKA3Q8IX90 AC005332.8-201ENST00000622750 2735 ntBASIC16.49■□□□□ 0.23
SKA3Q8IX90 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 RCC2P3-201ENST00000418112 1537 ntBASIC16.49■□□□□ 0.23
SKA3Q8IX90 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SKA3Q8IX90 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.49■□□□□ 0.23
SKA3Q8IX90 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SKA3Q8IX90 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 AC093503.3-201ENST00000624917 2352 ntBASIC16.48■□□□□ 0.23
SKA3Q8IX90 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 AC087499.1-201ENST00000418141 1075 ntBASIC16.48■□□□□ 0.23
SKA3Q8IX90 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 EGLN1P1-201ENST00000531623 762 ntBASIC16.48■□□□□ 0.23
SKA3Q8IX90 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 AC116562.4-202ENST00000641738 218 ntBASIC16.48■□□□□ 0.23
SKA3Q8IX90 AC068587.9-201ENST00000641814 219 ntBASIC16.48■□□□□ 0.23
SKA3Q8IX90 HEIH-201ENST00000623091 1652 ntBASIC16.48■□□□□ 0.23
SKA3Q8IX90 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SKA3Q8IX90 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SKA3Q8IX90 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 GPAT2P1-201ENST00000444924 1672 ntBASIC16.47■□□□□ 0.23
SKA3Q8IX90 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 INGX-201ENST00000359239 846 ntBASIC16.47■□□□□ 0.23
SKA3Q8IX90 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 AP003041.3-201ENST00000527151 707 ntBASIC16.47■□□□□ 0.23
SKA3Q8IX90 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SKA3Q8IX90 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.47■□□□□ 0.23
SKA3Q8IX90 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms