Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.46■□□□□ 0.71
HDAC4P56524 FAM87A-204ENST00000613235 858 ntBASIC19.46■□□□□ 0.71
HDAC4P56524 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HDAC4P56524 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HDAC4P56524 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
HDAC4P56524 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.46■□□□□ 0.71
HDAC4P56524 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HDAC4P56524 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.46■□□□□ 0.71
HDAC4P56524 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HDAC4P56524 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.7
HDAC4P56524 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 AC036111.1-201ENST00000533973 1582 ntBASIC19.45■□□□□ 0.7
HDAC4P56524 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HDAC4P56524 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
HDAC4P56524 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 MIR3180-5-201ENST00000583743 153 ntBASIC19.45■□□□□ 0.7
HDAC4P56524 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
HDAC4P56524 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HDAC4P56524 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.45■□□□□ 0.7
HDAC4P56524 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.45■□□□□ 0.7
HDAC4P56524 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.45■□□□□ 0.7
HDAC4P56524 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDAC4P56524 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.44■□□□□ 0.7
HDAC4P56524 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.44■□□□□ 0.7
HDAC4P56524 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 AC104581.1-202ENST00000635932 2618 ntBASIC19.44■□□□□ 0.7
HDAC4P56524 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.44■□□□□ 0.7
HDAC4P56524 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.44■□□□□ 0.7
HDAC4P56524 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.44■□□□□ 0.7
HDAC4P56524 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.44■□□□□ 0.7
HDAC4P56524 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
HDAC4P56524 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.44■□□□□ 0.7
HDAC4P56524 ECEL1P2-202ENST00000465689 757 ntBASIC19.44■□□□□ 0.7
HDAC4P56524 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 CR769767.2-201ENST00000622735 460 ntBASIC19.44■□□□□ 0.7
HDAC4P56524 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.44■□□□□ 0.7
HDAC4P56524 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
HDAC4P56524 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HDAC4P56524 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
HDAC4P56524 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HDAC4P56524 AC005082.1-201ENST00000413042 2259 ntBASIC19.44■□□□□ 0.7
HDAC4P56524 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDAC4P56524 LINC01568-207ENST00000641790 1380 ntBASIC19.44■□□□□ 0.7
HDAC4P56524 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 AC126763.1-201ENST00000552015 2118 ntBASIC19.43■□□□□ 0.7
HDAC4P56524 KRT8P45-201ENST00000414328 1447 ntBASIC19.43■□□□□ 0.7
HDAC4P56524 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.43■□□□□ 0.7
HDAC4P56524 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC4P56524 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC4P56524 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.43■□□□□ 0.7
HDAC4P56524 AC128688.1-201ENST00000487626 519 ntBASIC19.43■□□□□ 0.7
HDAC4P56524 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms