Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.31■□□□□ 0.52
PKNOX1P55347 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.31■□□□□ 0.52
PKNOX1P55347 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.31■□□□□ 0.52
PKNOX1P55347 NIFKP9-201ENST00000419265 221 ntBASIC18.31■□□□□ 0.52
PKNOX1P55347 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.31■□□□□ 0.52
PKNOX1P55347 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 RN7SL471P-201ENST00000580476 299 ntBASIC18.31■□□□□ 0.52
PKNOX1P55347 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.31■□□□□ 0.52
PKNOX1P55347 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PKNOX1P55347 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PKNOX1P55347 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PKNOX1P55347 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.3■□□□□ 0.52
PKNOX1P55347 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 AC073592.3-201ENST00000625118 1834 ntBASIC18.3■□□□□ 0.52
PKNOX1P55347 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PKNOX1P55347 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PKNOX1P55347 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.3■□□□□ 0.52
PKNOX1P55347 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.3■□□□□ 0.52
PKNOX1P55347 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.3■□□□□ 0.52
PKNOX1P55347 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.3■□□□□ 0.52
PKNOX1P55347 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.3■□□□□ 0.52
PKNOX1P55347 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PKNOX1P55347 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.3■□□□□ 0.52
PKNOX1P55347 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.3■□□□□ 0.52
PKNOX1P55347 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PKNOX1P55347 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.29■□□□□ 0.52
PKNOX1P55347 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PKNOX1P55347 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.29■□□□□ 0.52
PKNOX1P55347 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PKNOX1P55347 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.29■□□□□ 0.52
PKNOX1P55347 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.29■□□□□ 0.52
PKNOX1P55347 AC004980.1-204ENST00000429707 299 ntBASIC18.29■□□□□ 0.52
PKNOX1P55347 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.29■□□□□ 0.52
PKNOX1P55347 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.29■□□□□ 0.52
PKNOX1P55347 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.29■□□□□ 0.52
PKNOX1P55347 AL353708.3-201ENST00000610272 989 ntBASIC18.29■□□□□ 0.52
PKNOX1P55347 AC068587.9-201ENST00000641814 219 ntBASIC18.29■□□□□ 0.52
PKNOX1P55347 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.29■□□□□ 0.52
PKNOX1P55347 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PKNOX1P55347 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PKNOX1P55347 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.29■□□□□ 0.52
PKNOX1P55347 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PKNOX1P55347 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PKNOX1P55347 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.28■□□□□ 0.52
PKNOX1P55347 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.28■□□□□ 0.52
PKNOX1P55347 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.28■□□□□ 0.52
PKNOX1P55347 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PKNOX1P55347 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PKNOX1P55347 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PKNOX1P55347 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.28■□□□□ 0.52
PKNOX1P55347 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PKNOX1P55347 AC020916.1-201ENST00000587762 1774 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms