Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP11P51784 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
USP11P51784 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.06■□□□□ 0.96
USP11P51784 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.06■□□□□ 0.96
USP11P51784 AC034232.1-201ENST00000506026 1064 ntBASIC21.06■□□□□ 0.96
USP11P51784 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
USP11P51784 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.06■□□□□ 0.96
USP11P51784 LINC01238-205ENST00000567549 1107 ntBASIC21.06■□□□□ 0.96
USP11P51784 MIR3917-201ENST00000580971 93 ntBASIC21.06■□□□□ 0.96
USP11P51784 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.06■□□□□ 0.96
USP11P51784 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
USP11P51784 AC010240.3-201ENST00000607688 395 ntBASIC21.06■□□□□ 0.96
USP11P51784 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
USP11P51784 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
USP11P51784 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.06■□□□□ 0.96
USP11P51784 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP11P51784 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.06■□□□□ 0.96
USP11P51784 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP11P51784 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.05■□□□□ 0.96
USP11P51784 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.05■□□□□ 0.96
USP11P51784 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.05■□□□□ 0.96
USP11P51784 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 AL590326.2-201ENST00000625139 305 ntBASIC21.05■□□□□ 0.96
USP11P51784 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.05■□□□□ 0.96
USP11P51784 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP11P51784 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 MYLKP1-201ENST00000509077 1580 ntBASIC21.05■□□□□ 0.96
USP11P51784 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.05■□□□□ 0.96
USP11P51784 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP11P51784 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP11P51784 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.04■□□□□ 0.96
USP11P51784 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.04■□□□□ 0.96
USP11P51784 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.04■□□□□ 0.96
USP11P51784 RASA4DP-201ENST00000460726 1199 ntBASIC21.04■□□□□ 0.96
USP11P51784 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
USP11P51784 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.04■□□□□ 0.96
USP11P51784 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.04■□□□□ 0.96
USP11P51784 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.04■□□□□ 0.96
USP11P51784 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
USP11P51784 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.04■□□□□ 0.96
USP11P51784 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
USP11P51784 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.04■□□□□ 0.96
USP11P51784 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 AL499627.1-201ENST00000569373 2188 ntBASIC21.04■□□□□ 0.96
USP11P51784 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.04■□□□□ 0.96
USP11P51784 AL163051.1-201ENST00000569214 1512 ntBASIC21.04■□□□□ 0.96
USP11P51784 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP11P51784 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP11P51784 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USP11P51784 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.03■□□□□ 0.96
USP11P51784 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP11P51784 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP11P51784 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP11P51784 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP11P51784 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.03■□□□□ 0.96
USP11P51784 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.03■□□□□ 0.96
USP11P51784 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP11P51784 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.03■□□□□ 0.96
USP11P51784 AC092647.4-201ENST00000457211 535 ntBASIC21.03■□□□□ 0.96
USP11P51784 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.03■□□□□ 0.96
USP11P51784 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USP11P51784 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
USP11P51784 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP11P51784 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms