Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX3P48380 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RFX3P48380 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX3P48380 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX3P48380 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
RFX3P48380 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RFX3P48380 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.55■□□□□ 0.4
RFX3P48380 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.54■□□□□ 0.4
RFX3P48380 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RFX3P48380 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX3P48380 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX3P48380 CRYGFP-201ENST00000418459 633 ntBASIC17.54■□□□□ 0.4
RFX3P48380 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX3P48380 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 AC097488.1-201ENST00000507834 756 ntBASIC17.54■□□□□ 0.4
RFX3P48380 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX3P48380 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.54■□□□□ 0.4
RFX3P48380 AC066615.1-201ENST00000640911 628 ntBASIC17.54■□□□□ 0.4
RFX3P48380 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RFX3P48380 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RFX3P48380 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX3P48380 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX3P48380 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX3P48380 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
RFX3P48380 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
RFX3P48380 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX3P48380 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
RFX3P48380 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX3P48380 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.53■□□□□ 0.4
RFX3P48380 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
RFX3P48380 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RFX3P48380 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
RFX3P48380 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX3P48380 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
RFX3P48380 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
RFX3P48380 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
RFX3P48380 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
RFX3P48380 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.52■□□□□ 0.4
RFX3P48380 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.52■□□□□ 0.4
RFX3P48380 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
RFX3P48380 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
RFX3P48380 MFAP1P1-201ENST00000442257 1255 ntBASIC17.52■□□□□ 0.4
RFX3P48380 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.52■□□□□ 0.4
RFX3P48380 AC116562.2-201ENST00000507042 360 ntBASIC17.52■□□□□ 0.4
RFX3P48380 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
RFX3P48380 CKBP1-201ENST00000565489 1086 ntBASIC17.52■□□□□ 0.4
RFX3P48380 AP000692.2-201ENST00000608391 879 ntBASIC17.52■□□□□ 0.4
RFX3P48380 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
RFX3P48380 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX3P48380 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
RFX3P48380 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
RFX3P48380 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
RFX3P48380 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
RFX3P48380 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RFX3P48380 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms