Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.25■□□□□ 0.19
COL8A1P27658 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL8A1P27658 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL8A1P27658 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.25■□□□□ 0.19
COL8A1P27658 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 GPX1P2-201ENST00000429271 606 ntBASIC16.25■□□□□ 0.19
COL8A1P27658 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.25■□□□□ 0.19
COL8A1P27658 AC018712.1-201ENST00000455767 687 ntBASIC16.25■□□□□ 0.19
COL8A1P27658 MIR3197-201ENST00000582241 73 ntBASIC16.25■□□□□ 0.19
COL8A1P27658 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.25■□□□□ 0.19
COL8A1P27658 AC008608.2-201ENST00000606089 416 ntBASIC16.25■□□□□ 0.19
COL8A1P27658 FAM215A-202ENST00000632077 792 ntBASIC16.25■□□□□ 0.19
COL8A1P27658 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.25■□□□□ 0.19
COL8A1P27658 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL8A1P27658 AC104109.2-201ENST00000602919 1418 ntBASIC16.25■□□□□ 0.19
COL8A1P27658 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL8A1P27658 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 LINC01521-201ENST00000504184 1943 ntBASIC16.25■□□□□ 0.19
COL8A1P27658 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
COL8A1P27658 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL8A1P27658 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
COL8A1P27658 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL8A1P27658 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.24■□□□□ 0.19
COL8A1P27658 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.24■□□□□ 0.19
COL8A1P27658 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
COL8A1P27658 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 HNRNPDP1-201ENST00000439535 754 ntBASIC16.24■□□□□ 0.19
COL8A1P27658 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.24■□□□□ 0.19
COL8A1P27658 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.24■□□□□ 0.19
COL8A1P27658 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.24■□□□□ 0.19
COL8A1P27658 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.24■□□□□ 0.19
COL8A1P27658 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.24■□□□□ 0.19
COL8A1P27658 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 AL157384.1-201ENST00000445995 2473 ntBASIC16.24■□□□□ 0.19
COL8A1P27658 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL8A1P27658 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
COL8A1P27658 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.23■□□□□ 0.19
COL8A1P27658 VENTXP7-201ENST00000475503 772 ntBASIC16.23■□□□□ 0.19
COL8A1P27658 GUSBP12-201ENST00000513727 720 ntBASIC16.23■□□□□ 0.19
COL8A1P27658 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.23■□□□□ 0.19
COL8A1P27658 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.23■□□□□ 0.19
COL8A1P27658 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.23■□□□□ 0.19
COL8A1P27658 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
COL8A1P27658 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL8A1P27658 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 AC092667.1-201ENST00000434301 2586 ntBASIC16.23■□□□□ 0.19
COL8A1P27658 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL8A1P27658 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
COL8A1P27658 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms