Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.26■□□□□ 0.67
VCANP13611 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.26■□□□□ 0.67
VCANP13611 AC004817.3-201ENST00000602957 2129 ntBASIC19.26■□□□□ 0.67
VCANP13611 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
VCANP13611 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.26■□□□□ 0.67
VCANP13611 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.26■□□□□ 0.67
VCANP13611 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.26■□□□□ 0.67
VCANP13611 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
VCANP13611 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.26■□□□□ 0.67
VCANP13611 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.25■□□□□ 0.67
VCANP13611 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VCANP13611 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.25■□□□□ 0.67
VCANP13611 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.25■□□□□ 0.67
VCANP13611 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.25■□□□□ 0.67
VCANP13611 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.25■□□□□ 0.67
VCANP13611 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
VCANP13611 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 AP005117.1-201ENST00000584346 1413 ntBASIC19.25■□□□□ 0.67
VCANP13611 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VCANP13611 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.25■□□□□ 0.67
VCANP13611 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VCANP13611 PRSS29P-201ENST00000440800 595 ntBASIC19.25■□□□□ 0.67
VCANP13611 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VCANP13611 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.25■□□□□ 0.67
VCANP13611 AC021087.4-201ENST00000563761 564 ntBASIC19.25■□□□□ 0.67
VCANP13611 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VCANP13611 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VCANP13611 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VCANP13611 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.24■□□□□ 0.67
VCANP13611 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.24■□□□□ 0.67
VCANP13611 AC002472.2-201ENST00000442739 958 ntBASIC19.24■□□□□ 0.67
VCANP13611 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VCANP13611 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.24■□□□□ 0.67
VCANP13611 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VCANP13611 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.24■□□□□ 0.67
VCANP13611 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.24■□□□□ 0.67
VCANP13611 RBM17P3-201ENST00000417687 1192 ntBASIC19.24■□□□□ 0.67
VCANP13611 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VCANP13611 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCANP13611 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.24■□□□□ 0.67
VCANP13611 MTDHP3-201ENST00000594186 672 ntBASIC19.24■□□□□ 0.67
VCANP13611 AL390955.2-201ENST00000603032 514 ntBASIC19.24■□□□□ 0.67
VCANP13611 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
VCANP13611 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VCANP13611 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.23■□□□□ 0.67
VCANP13611 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.23■□□□□ 0.67
VCANP13611 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.23■□□□□ 0.67
VCANP13611 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.23■□□□□ 0.67
VCANP13611 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
VCANP13611 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.23■□□□□ 0.67
VCANP13611 GPR32P1-201ENST00000601788 811 ntBASIC19.23■□□□□ 0.67
VCANP13611 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VCANP13611 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.23■□□□□ 0.67
VCANP13611 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.23■□□□□ 0.67
VCANP13611 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.23■□□□□ 0.67
VCANP13611 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.23■□□□□ 0.67
VCANP13611 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VCANP13611 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCANP13611 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.23■□□□□ 0.67
VCANP13611 AC002310.6-201ENST00000624451 1377 ntBASIC19.22■□□□□ 0.67
VCANP13611 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.22■□□□□ 0.67
VCANP13611 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.22■□□□□ 0.67
VCANP13611 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.22■□□□□ 0.67
VCANP13611 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VCANP13611 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 OR8S1-201ENST00000310194 1080 ntBASIC19.22■□□□□ 0.67
VCANP13611 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.22■□□□□ 0.67
VCANP13611 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCANP13611 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.22■□□□□ 0.67
VCANP13611 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.22■□□□□ 0.67
VCANP13611 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms